IL_6NDK_081

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UCA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_081 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2458

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6NDK|1|RA|U|839
6NDK|1|RA|C|840
6NDK|1|RA|A|841
*
6NDK|1|RA|U|937
6NDK|1|RA|G|939

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R8

50S ribosomal protein L35

Chain RP

50S ribosomal protein L15