IL_6NDK_082

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

6NDK|1|RA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_082 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.1942

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6NDK|1|RA|C|844
6NDK|1|RA|G|845
6NDK|1|RA|C|846
*
6NDK|1|RA|G|931
6NDK|1|RA|G|932
6NDK|1|RA|A|933
6NDK|1|RA|G|934

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R3

50S ribosomal protein L30