IL_6NDK_083

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_083 not in the Motif Atlas

Geometric match to IL_7RQB_026

Geometric discrepancy: 0.2082

The information below is about IL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94165.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6NDK|1|RA|C|846
6NDK|1|RA|U|847
6NDK|1|RA|G|848
6NDK|1|RA|A|849
6NDK|1|RA|C|850
*
6NDK|1|RA|G|927
6NDK|1|RA|G|928
6NDK|1|RA|U|930
6NDK|1|RA|G|931

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R3

50S ribosomal protein L30