IL_6NDK_094

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6NDK|1|RA|U|1142|||A, 6NDK|1|RA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_094 not in the Motif Atlas

Geometric match to IL_7RQB_039

Geometric discrepancy: 0.1583

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6NDK|1|RA|C|1018
6NDK|1|RA|U|1019
6NDK|1|RA|A|1020
6NDK|1|RA|A|1021
6NDK|1|RA|G|1022
6NDK|1|RA|U|1023
6NDK|1|RA|G|1024
*
6NDK|1|RA|C|1140
6NDK|1|RA|U|1141
6NDK|1|RA|U|1142|||A
6NDK|1|RA|A|1142|||B
6NDK|1|RA|A|1143
6NDK|1|RA|G|1144

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13