3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
6NDK|1|RA|A|1460
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NDK_113 not in the Motif Atlas
Geometric match to IL_7RQB_059
Geometric discrepancy: 0.166
The information below is about IL_7RQB_059
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

6NDK|1|RA|C|1450|||B
6NDK|1|RA|C|1451
*
6NDK|1|RA|G|1459
6NDK|1|RA|A|1460
6NDK|1|RA|G|1461

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RR
50S ribosomal protein L17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4007 s