IL_6NDK_122

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6NDK|1|RA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_122 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1339

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6NDK|1|RA|C|1686
6NDK|1|RA|G|1687
6NDK|1|RA|U|1688
6NDK|1|RA|A|1689
6NDK|1|RA|A|1690
6NDK|1|RA|C|1691
*
6NDK|1|RA|G|1696
6NDK|1|RA|G|1697
6NDK|1|RA|A|1698
6NDK|1|RA|G|1699
6NDK|1|RA|A|1700
6NDK|1|RA|A|1701
6NDK|1|RA|G|1702

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2