3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
GAUAAC*GGAAGC
Length
12 nucleotides
Bulged bases
6NDK|1|RA|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NDK_161 not in the Motif Atlas
Homologous match to IL_7RQB_107
Geometric discrepancy: 0.1595
The information below is about IL_7RQB_107
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.5
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6NDK|1|RA|G|2737
6NDK|1|RA|A|2738
6NDK|1|RA|U|2739
6NDK|1|RA|A|2740
6NDK|1|RA|A|2741
6NDK|1|RA|C|2742
*
6NDK|1|RA|G|2762
6NDK|1|RA|G|2763
6NDK|1|RA|A|2764
6NDK|1|RA|A|2765
6NDK|1|RA|G|2766
6NDK|1|RA|C|2767

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R9
50S ribosomal protein L36
Chain RH
50S ribosomal protein L6
Chain RN
50S ribosomal protein L13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1977 s