IL_6NDK_169
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6NDK_169 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1344
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6NDK|1|RB|C|71
6NDK|1|RB|G|72
6NDK|1|RB|A|73
6NDK|1|RB|U|74
6NDK|1|RB|G|75
6NDK|1|RB|G|76
6NDK|1|RB|U|77
6NDK|1|RB|A|78
6NDK|1|RB|C|79
*
6NDK|1|RB|G|98
6NDK|1|RB|G|99
6NDK|1|RB|A|100
6NDK|1|RB|G|101
6NDK|1|RB|A|102
6NDK|1|RB|G|103
6NDK|1|RB|U|104
6NDK|1|RB|A|105
6NDK|1|RB|G|106
Current chains
- Chain RB
- 5S rRNA
Nearby chains
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
- Chain RQ
- 50S ribosomal protein L16
- Chain RZ
- 50S ribosomal protein L25
Coloring options: