IL_6NDK_172

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

6NDK|1|XA|C|48, 6NDK|1|XA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_172 not in the Motif Atlas

Geometric match to IL_6CZR_115

Geometric discrepancy: 0.1348

The information below is about IL_6CZR_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6NDK|1|XA|C|47
6NDK|1|XA|C|48
6NDK|1|XA|U|49
6NDK|1|XA|A|50
6NDK|1|XA|A|51
6NDK|1|XA|G|52
*
6NDK|1|XA|U|359
6NDK|1|XA|A|360
6NDK|1|XA|G|361

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12