IL_6NDK_185

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

6NDK|1|XA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_185 not in the Motif Atlas

Homologous match to IL_5J7L_019

Geometric discrepancy: 0.1323

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6NDK|1|XA|U|375
6NDK|1|XA|G|376
*
6NDK|1|XA|U|387
6NDK|1|XA|G|388
6NDK|1|XA|A|389

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16