IL_6NDK_186

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

6NDK|1|XA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_186 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1287

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6NDK|1|XA|G|409
6NDK|1|XA|G|410
6NDK|1|XA|A|411
6NDK|1|XA|A|412
6NDK|1|XA|G|413
6NDK|1|XA|A|414
6NDK|1|XA|A|415
6NDK|1|XA|G|416
*
6NDK|1|XA|U|427
6NDK|1|XA|G|428
6NDK|1|XA|U|429
6NDK|1|XA|A|430
6NDK|1|XA|A|431
6NDK|1|XA|A|432
6NDK|1|XA|C|433

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4