IL_6NDK_224
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- G(4OC)C(5MC)G*CG(UR3)AAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4OC, 5MC, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6NDK_224 not in the Motif Atlas
- Homologous match to IL_4LFB_057
- Geometric discrepancy: 0.139
- The information below is about IL_4LFB_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6NDK|1|XA|G|1401
6NDK|1|XA|4OC|1402
6NDK|1|XA|C|1403
6NDK|1|XA|5MC|1404
6NDK|1|XA|G|1405
*
6NDK|1|XA|C|1496
6NDK|1|XA|G|1497
6NDK|1|XA|UR3|1498
6NDK|1|XA|A|1499
6NDK|1|XA|A|1500
6NDK|1|XA|C|1501
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XL
- 30S ribosomal protein S12
- Chain XV
- Transfer RNA; tRNA
- Chain XX
- mRNA
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
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