3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
CGGGAG*CAG
Length
9 nucleotides
Bulged bases
6NDK|1|XA|G|1442|||B
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NDK_230 not in the Motif Atlas
Homologous match to IL_6CZR_172
Geometric discrepancy: 0.1723
The information below is about IL_6CZR_172
Detailed Annotation
Isolated basepair with bulged bases
Broad Annotation
Isolated basepair with bulged bases
Motif group
IL_97255.3
Basepair signature
cWW-tSH-L-cWW-L
Number of instances in this motif group
5

Unit IDs

6NDK|1|XA|C|1440
6NDK|1|XA|G|1441
6NDK|1|XA|G|1442|||A
6NDK|1|XA|G|1442|||B
6NDK|1|XA|A|1442|||C
6NDK|1|XA|G|1443
*
6NDK|1|XA|C|1459
6NDK|1|XA|A|1460
6NDK|1|XA|G|1461

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XT
30S ribosomal protein S20
Chain YA
Large subunit ribosomal RNA; LSU rRNA
Chain YT
50S ribosomal protein L19

Coloring options:


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