IL_6NDK_234

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GAG*CUCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_234 not in the Motif Atlas

Geometric match to IL_3PDR_004

Geometric discrepancy: 0.3065

The information below is about IL_3PDR_004

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6NDK|1|YA|G|42
6NDK|1|YA|A|43
6NDK|1|YA|G|44
*
6NDK|1|YA|C|433
6NDK|1|YA|U|434
6NDK|1|YA|C|435
6NDK|1|YA|C|436

Current chains

Chain YA

23S rRNA

Nearby chains