IL_6NDK_277

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

6NDK|1|YA|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_277 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.1841

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6NDK|1|YA|C|1202
6NDK|1|YA|G|1203
6NDK|1|YA|A|1204
6NDK|1|YA|U|1205
6NDK|1|YA|G|1206
*
6NDK|1|YA|U|1240
6NDK|1|YA|A|1241
6NDK|1|YA|A|1242
6NDK|1|YA|G|1243

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YP

50S ribosomal protein L15