3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
CGAUGGUAC*GGAGAGUAG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NDK_344 not in the Motif Atlas
Homologous match to IL_7RQB_115
Geometric discrepancy: 0.0892
The information below is about IL_7RQB_115
Detailed Annotation
Bacterial 5S Loop E
Broad Annotation
Loop E
Motif group
IL_56455.3
Basepair signature
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6NDK|1|YB|C|71
6NDK|1|YB|G|72
6NDK|1|YB|A|73
6NDK|1|YB|U|74
6NDK|1|YB|G|75
6NDK|1|YB|G|76
6NDK|1|YB|U|77
6NDK|1|YB|A|78
6NDK|1|YB|C|79
*
6NDK|1|YB|G|98
6NDK|1|YB|G|99
6NDK|1|YB|A|100
6NDK|1|YB|G|101
6NDK|1|YB|A|102
6NDK|1|YB|G|103
6NDK|1|YB|U|104
6NDK|1|YB|A|105
6NDK|1|YB|G|106

Current chains

Chain YB
5S rRNA

Nearby chains

Chain YA
Large subunit ribosomal RNA; LSU rRNA
Chain YQ
50S ribosomal protein L16
Chain YZ
50S ribosomal protein L25

Coloring options:


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