IL_6NDK_355

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGAC*GCG

Length

7 nucleotides

Bulged bases

6NDK|1|RA|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_355 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2472

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6NDK|1|RA|C|1218
6NDK|1|RA|G|1219
6NDK|1|RA|A|1220
6NDK|1|RA|C|1221|||A
*
6NDK|1|RA|G|1229
6NDK|1|RA|C|1230
6NDK|1|RA|G|1231

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20

Chain RV

50S ribosomal protein L21