IL_6NDK_362

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

AGG*CACCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_362 not in the Motif Atlas

Homologous match to IL_5J7L_335

Geometric discrepancy: 0.273

The information below is about IL_5J7L_335

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NDK|1|RA|A|2453
6NDK|1|RA|G|2454
6NDK|1|RA|G|2455
*
6NDK|1|RA|C|2496
6NDK|1|RA|A|2497
6NDK|1|RA|C|2498
6NDK|1|RA|C|2499
6NDK|1|RA|U|2500

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RQ

50S ribosomal protein L16

Chain ZA

tRNA acceptor end mimic