IL_6NDK_368

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GAC*GUGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_368 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.3319

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

6NDK|1|XA|G|654
6NDK|1|XA|A|655
6NDK|1|XA|C|656
*
6NDK|1|XA|G|750
6NDK|1|XA|U|751
6NDK|1|XA|G|752
6NDK|1|XA|A|753
6NDK|1|XA|C|754

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XH

30S ribosomal protein S8

Chain XO

30S ribosomal protein S15