IL_6NDK_385

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

6NDK|1|QA|C|48, 6NDK|1|QA|A|50, 6NDK|1|QA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_385 not in the Motif Atlas

Geometric match to IL_4LFB_003

Geometric discrepancy: 0.1797

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6NDK|1|QA|C|47
6NDK|1|QA|C|48
6NDK|1|QA|U|49
6NDK|1|QA|A|50
6NDK|1|QA|A|51
6NDK|1|QA|G|52
*
6NDK|1|QA|U|359
6NDK|1|QA|A|360
6NDK|1|QA|G|361

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9