IL_6NDK_387

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

6NDK|1|RA|C|1509|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_387 not in the Motif Atlas

Homologous match to IL_9DFE_060

Geometric discrepancy: 0.4319

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

6NDK|1|RA|U|1481
6NDK|1|RA|G|1482
*
6NDK|1|RA|C|1506
6NDK|1|RA|A|1507
6NDK|1|RA|A|1508
6NDK|1|RA|C|1509|||A
6NDK|1|RA|A|1509|||B
6NDK|1|RA|A|1509|||C
6NDK|1|RA|G|1510

Current chains

Chain RA

23S rRNA

Nearby chains