IL_6NQB_002

3D structure

PDB id

6NQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CAUG

Length

7 nucleotides

Bulged bases

6NQB|1|A|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NQB_002 not in the Motif Atlas

Geometric match to IL_5TBW_008

Geometric discrepancy: 0.3151

The information below is about IL_5TBW_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6NQB|1|A|C|43
6NQB|1|A|A|44
6NQB|1|A|G|45
*
6NQB|1|A|C|396
6NQB|1|A|A|397
6NQB|1|A|U|398
6NQB|1|A|G|399

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN bS16