IL_6NQB_018

3D structure

PDB id

6NQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NQB_018 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1936

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6NQB|1|A|U|409
6NQB|1|A|G|410
6NQB|1|A|A|411
6NQB|1|A|A|412
6NQB|1|A|G|413
6NQB|1|A|A|414
6NQB|1|A|A|415
6NQB|1|A|G|416
*
6NQB|1|A|U|427
6NQB|1|A|G|428
6NQB|1|A|U|429
6NQB|1|A|A|430
6NQB|1|A|A|431
6NQB|1|A|A|432
6NQB|1|A|G|433

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain D

30S ribosomal protein S4