IL_6NQB_045

3D structure

PDB id

6NQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NQB_045 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.2539

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6NQB|1|A|C|1303
6NQB|1|A|G|1304
6NQB|1|A|G|1305
6NQB|1|A|A|1306
6NQB|1|A|U|1307
6NQB|1|A|U|1308
*
6NQB|1|A|A|1329
6NQB|1|A|U|1330
6NQB|1|A|G|1331
6NQB|1|A|A|1332
6NQB|1|A|A|1333
6NQB|1|A|G|1334

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains