IL_6NSH_077

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6NSH|1|RA|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_077 not in the Motif Atlas

Geometric match to IL_7A0S_016

Geometric discrepancy: 0.0883

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

6NSH|1|RA|C|697
6NSH|1|RA|C|698
*
6NSH|1|RA|G|763
6NSH|1|RA|A|764
6NSH|1|RA|G|765

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2