IL_6NSH_099

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGG*CCAUC

Length

9 nucleotides

Bulged bases

6NSH|1|RA|C|1076

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_099 not in the Motif Atlas

Homologous match to IL_7RQB_043

Geometric discrepancy: 0.538

The information below is about IL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NSH|1|RA|G|1059
6NSH|1|RA|U|1060
6NSH|1|RA|G|1062
6NSH|1|RA|G|1063
*
6NSH|1|RA|C|1075
6NSH|1|RA|C|1076
6NSH|1|RA|A|1077
6NSH|1|RA|U|1078
6NSH|1|RA|C|1079

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25