IL_6NSH_100

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6NSH|1|RA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_100 not in the Motif Atlas

Geometric match to IL_7RQB_022

Geometric discrepancy: 0.2967

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

6NSH|1|RA|G|1087
6NSH|1|RA|A|1088
6NSH|1|RA|G|1089
6NSH|1|RA|U|1090
6NSH|1|RA|G|1091
*
6NSH|1|RA|C|1100
6NSH|1|RA|U|1101
6NSH|1|RA|C|1102

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36