IL_6NSH_117

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

6NSH|1|RA|A|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_117 not in the Motif Atlas

Homologous match to IL_9DFE_060

Geometric discrepancy: 0.5899

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

6NSH|1|RA|U|1482
6NSH|1|RA|G|1483
*
6NSH|1|RA|C|1506
6NSH|1|RA|A|1507
6NSH|1|RA|A|1508
6NSH|1|RA|C|1509
6NSH|1|RA|A|1510
6NSH|1|RA|A|1511
6NSH|1|RA|G|1512

Current chains

Chain RA

23S rRNA

Nearby chains