IL_6NSH_181

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCC*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_181 not in the Motif Atlas

Geometric match to IL_4WF9_007

Geometric discrepancy: 0.2457

The information below is about IL_4WF9_007

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

6NSH|1|XA|G|186|||C
6NSH|1|XA|C|186|||D
6NSH|1|XA|C|186|||E
*
6NSH|1|XA|G|191|||C
6NSH|1|XA|U|191|||D

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20