IL_6NSH_193

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6NSH|1|XA|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_193 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0956

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6NSH|1|XA|C|569
6NSH|1|XA|G|570
6NSH|1|XA|U|571
6NSH|1|XA|A|572
6NSH|1|XA|A|573
6NSH|1|XA|A|574
6NSH|1|XA|G|575
*
6NSH|1|XA|C|880
6NSH|1|XA|G|881

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

30S ribosomal protein S5

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17