IL_6NSH_239

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_239 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0666

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6NSH|1|YA|U|239
6NSH|1|YA|G|240
6NSH|1|YA|A|241
6NSH|1|YA|G|242
6NSH|1|YA|U|243
6NSH|1|YA|A|244
6NSH|1|YA|G|245
*
6NSH|1|YA|C|253
6NSH|1|YA|G|254
6NSH|1|YA|A|255
6NSH|1|YA|A|256
6NSH|1|YA|A|257
6NSH|1|YA|G|258

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y8

50S ribosomal protein L35

Chain YP

50S ribosomal protein L15