IL_6NSH_269

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6NSH|1|YA|U|1142, 6NSH|1|YA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_269 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1121

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

6NSH|1|YA|C|1018
6NSH|1|YA|U|1019
6NSH|1|YA|A|1020
6NSH|1|YA|A|1021
6NSH|1|YA|G|1022
6NSH|1|YA|U|1023
6NSH|1|YA|G|1024
*
6NSH|1|YA|C|1140
6NSH|1|YA|U|1141
6NSH|1|YA|U|1142
6NSH|1|YA|A|1142|||A
6NSH|1|YA|A|1143
6NSH|1|YA|G|1144

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YH

50S ribosomal protein L6

Chain YN

50S ribosomal protein L13