3D structure

PDB id
6NSH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGAUG*CUAAG
Length
10 nucleotides
Bulged bases
6NSH|1|YA|U|1420
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NSH_284 not in the Motif Atlas
Homologous match to IL_5J7L_295
Geometric discrepancy: 0.1252
The information below is about IL_5J7L_295
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

6NSH|1|YA|C|1417
6NSH|1|YA|G|1418
6NSH|1|YA|A|1419
6NSH|1|YA|U|1420
6NSH|1|YA|G|1421
*
6NSH|1|YA|C|1577
6NSH|1|YA|U|1578
6NSH|1|YA|A|1579
6NSH|1|YA|A|1580
6NSH|1|YA|G|1581

Current chains

Chain YA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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