IL_6NSH_296

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

6NSH|1|YA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_296 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.1285

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6NSH|1|YA|A|1669
6NSH|1|YA|C|1670
6NSH|1|YA|U|1671
6NSH|1|YA|C|1672
6NSH|1|YA|U|1673
6NSH|1|YA|G|1674
*
6NSH|1|YA|C|1990
6NSH|1|YA|U|1991
6NSH|1|YA|G|1992
6NSH|1|YA|U|1993

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YO

50S ribosomal protein L14