IL_6NSH_313

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCCUGCGUAGGAUAGGUG*CACCCUGGC

Length

27 nucleotides

Bulged bases

6NSH|1|YA|C|2111, 6NSH|1|YA|G|2112, 6NSH|1|YA|U|2113, 6NSH|1|YA|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NSH|1|YA|G|2106
6NSH|1|YA|C|2107
6NSH|1|YA|C|2108
6NSH|1|YA|U|2109
6NSH|1|YA|G|2110
6NSH|1|YA|C|2111
6NSH|1|YA|G|2112
6NSH|1|YA|U|2113
6NSH|1|YA|A|2114
6NSH|1|YA|G|2115
6NSH|1|YA|G|2116
6NSH|1|YA|A|2117
6NSH|1|YA|U|2118
6NSH|1|YA|A|2119
6NSH|1|YA|G|2120
6NSH|1|YA|G|2121
6NSH|1|YA|U|2122
6NSH|1|YA|G|2123
*
6NSH|1|YA|C|2175
6NSH|1|YA|A|2176
6NSH|1|YA|C|2177
6NSH|1|YA|C|2178
6NSH|1|YA|C|2179
6NSH|1|YA|U|2180
6NSH|1|YA|G|2181
6NSH|1|YA|G|2182
6NSH|1|YA|C|2183

Current chains

Chain YA

23S rRNA

Nearby chains