IL_6NSH_332

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

6NSH|1|YA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_332 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0786

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6NSH|1|YA|G|2737
6NSH|1|YA|A|2738
6NSH|1|YA|U|2739
6NSH|1|YA|A|2740
6NSH|1|YA|A|2741
6NSH|1|YA|C|2742
*
6NSH|1|YA|G|2762
6NSH|1|YA|G|2763
6NSH|1|YA|A|2764
6NSH|1|YA|A|2765
6NSH|1|YA|G|2766
6NSH|1|YA|C|2767

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YH

50S ribosomal protein L6

Chain YN

50S ribosomal protein L13