IL_6NTA_066

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

6NTA|1|RA|U|270|||O

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NTA_066 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.3063

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6NTA|1|RA|G|270|||J
6NTA|1|RA|C|270|||K
*
6NTA|1|RA|G|270|||N
6NTA|1|RA|U|270|||O
6NTA|1|RA|C|270|||P

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9