IL_6NTA_116

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NTA_116 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1273

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6NTA|1|RA|A|1469
6NTA|1|RA|G|1470
6NTA|1|RA|A|1471
6NTA|1|RA|A|1472
6NTA|1|RA|G|1473
*
6NTA|1|RA|U|1520
6NTA|1|RA|G|1521
6NTA|1|RA|G|1522
6NTA|1|RA|U|1523

Current chains

Chain RA

23S rRNA

Nearby chains