IL_6NTA_259

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

6NTA|1|YA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NTA_259 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.2494

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6NTA|1|YA|C|844
6NTA|1|YA|G|845
6NTA|1|YA|C|846
*
6NTA|1|YA|G|931
6NTA|1|YA|G|932
6NTA|1|YA|A|933
6NTA|1|YA|G|934

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L30