IL_6NTA_318

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6NTA|1|YA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NTA_318 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.4392

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6NTA|1|YA|C|2129
6NTA|1|YA|U|2130
6NTA|1|YA|G|2131
6NTA|1|YA|U|2132
6NTA|1|YA|G|2133
6NTA|1|YA|A|2134
6NTA|1|YA|A|2135
6NTA|1|YA|C|2136
*
6NTA|1|YA|G|2155
6NTA|1|YA|G|2156
6NTA|1|YA|G|2157
6NTA|1|YA|A|2158
6NTA|1|YA|G|2159

Current chains

Chain YA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA