IL_6NWY_050

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_050 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.3599

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6NWY|1|QA|C|1259
6NWY|1|QA|C|1260
6NWY|1|QA|A|1261
6NWY|1|QA|C|1262
*
6NWY|1|QA|G|1273
6NWY|1|QA|G|1274
6NWY|1|QA|A|1275
6NWY|1|QA|G|1276

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QU

30S ribosomal protein Thx