IL_6NWY_102

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6NWY|1|RA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_102 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.3243

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6NWY|1|RA|G|1087
6NWY|1|RA|A|1088
6NWY|1|RA|G|1089
6NWY|1|RA|U|1090
6NWY|1|RA|G|1091
*
6NWY|1|RA|C|1100
6NWY|1|RA|U|1101
6NWY|1|RA|C|1102

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6