IL_6NWY_160

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

6NWY|1|RA|G|2655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_160 not in the Motif Atlas

Geometric match to IL_4WF9_100

Geometric discrepancy: 0.1925

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6NWY|1|RA|C|2652
6NWY|1|RA|U|2653
6NWY|1|RA|A|2654
6NWY|1|RA|G|2655
6NWY|1|RA|U|2656
6NWY|1|RA|A|2657
6NWY|1|RA|C|2658
*
6NWY|1|RA|G|2663
6NWY|1|RA|G|2664
6NWY|1|RA|A|2665
6NWY|1|RA|C|2666
6NWY|1|RA|C|2667
6NWY|1|RA|G|2668

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6