IL_6NWY_190

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

6NWY|1|XA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_190 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1263

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6NWY|1|XA|G|409
6NWY|1|XA|G|410
6NWY|1|XA|A|411
6NWY|1|XA|A|412
6NWY|1|XA|G|413
6NWY|1|XA|A|414
6NWY|1|XA|A|415
6NWY|1|XA|G|416
*
6NWY|1|XA|U|427
6NWY|1|XA|G|428
6NWY|1|XA|U|429
6NWY|1|XA|A|430
6NWY|1|XA|A|431
6NWY|1|XA|A|432
6NWY|1|XA|C|433

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4