IL_6NWY_203

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

6NWY|1|XA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_203 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.1212

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6NWY|1|XA|G|683
6NWY|1|XA|A|684
6NWY|1|XA|G|685
6NWY|1|XA|U|686
6NWY|1|XA|A|687
6NWY|1|XA|G|688
*
6NWY|1|XA|C|699
6NWY|1|XA|G|700
6NWY|1|XA|C|701
6NWY|1|XA|A|702
6NWY|1|XA|G|703
6NWY|1|XA|A|704
6NWY|1|XA|U|705
6NWY|1|XA|A|706
6NWY|1|XA|C|707

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XK

30S ribosomal protein S11

Chain YA

Large subunit ribosomal RNA; LSU rRNA