IL_6NWY_215

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6NWY|1|XA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_215 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1716

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6NWY|1|XA|U|1052
6NWY|1|XA|G|1053
6NWY|1|XA|C|1054
6NWY|1|XA|A|1055
6NWY|1|XA|U|1056
*
6NWY|1|XA|A|1204
6NWY|1|XA|U|1205
6NWY|1|XA|G|1206

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XJ

30S ribosomal protein S10

Chain XN

30S ribosomal protein S14 type Z