IL_6NWY_319

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGCCUG*CUGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_319 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3661

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6NWY|1|YA|C|2105
6NWY|1|YA|G|2106
6NWY|1|YA|C|2107
6NWY|1|YA|C|2108
6NWY|1|YA|U|2109
6NWY|1|YA|G|2110
*
6NWY|1|YA|C|2179
6NWY|1|YA|U|2180
6NWY|1|YA|G|2181
6NWY|1|YA|G|2182
6NWY|1|YA|C|2183
6NWY|1|YA|G|2184

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XK

30S ribosomal protein S11

Chain XV

Transfer RNA; tRNA