IL_6NWY_366

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

6NWY|1|XA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_366 not in the Motif Atlas

Homologous match to IL_6CZR_128

Geometric discrepancy: 0.199

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6NWY|1|XA|U|375
6NWY|1|XA|G|376
6NWY|1|XA|G|377
*
6NWY|1|XA|C|386
6NWY|1|XA|U|387
6NWY|1|XA|G|388
6NWY|1|XA|A|389

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16