IL_6NY6_018

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NY6_018 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1308

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6NY6|1|A|G|446
6NY6|1|A|G|447
6NY6|1|A|A|448
6NY6|1|A|C|449
6NY6|1|A|G|450
*
6NY6|1|A|C|483
6NY6|1|A|G|484
6NY6|1|A|G|485
6NY6|1|A|U|486
6NY6|1|A|A|487
6NY6|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16