IL_6NY6_033

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NY6_033 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1222

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6NY6|1|A|C|779
6NY6|1|A|A|780
6NY6|1|A|A|781
6NY6|1|A|A|782
6NY6|1|A|C|783
*
6NY6|1|A|G|799
6NY6|1|A|G|800
6NY6|1|A|U|801
6NY6|1|A|A|802
6NY6|1|A|G|803

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S11